2,816 research outputs found
Inducing Features of Random Fields
We present a technique for constructing random fields from a set of training
samples. The learning paradigm builds increasingly complex fields by allowing
potential functions, or features, that are supported by increasingly large
subgraphs. Each feature has a weight that is trained by minimizing the
Kullback-Leibler divergence between the model and the empirical distribution of
the training data. A greedy algorithm determines how features are incrementally
added to the field and an iterative scaling algorithm is used to estimate the
optimal values of the weights.
The statistical modeling techniques introduced in this paper differ from
those common to much of the natural language processing literature since there
is no probabilistic finite state or push-down automaton on which the model is
built. Our approach also differs from the techniques common to the computer
vision literature in that the underlying random fields are non-Markovian and
have a large number of parameters that must be estimated. Relations to other
learning approaches including decision trees and Boltzmann machines are given.
As a demonstration of the method, we describe its application to the problem of
automatic word classification in natural language processing.
Key words: random field, Kullback-Leibler divergence, iterative scaling,
divergence geometry, maximum entropy, EM algorithm, statistical learning,
clustering, word morphology, natural language processingComment: 34 pages, compressed postscrip
The ATLAS RPC ROD for Super LHC
The number of interactions per bunch crossing for the upgrade of the Large Hadron Collider is expected to be ten times greater than the actual one. As a consequence, the ATLAS detector for SLHC foresees the use of a larger number of readout channels and also a new trigger level is under development. In order to face with such issue, we developed a new architecture for the Read Out Driver (ROD) for the ATLAS RPC Muon Spectrometer in the barrel region. Presently, each ROD board receives ATLAS RPC Muon readout data and arranges all the data fragments of a sector of the spectrometer in a unique event, sending it to the next acquisition systems. Our new design is based on the new generation Xilinx Virtex5 FPGA and it works with a clock frequency six times greater than the actual bunch crossing rate of the LHC. We also implemented the output channel of the ROD, presently based on S-Link protocol, by using the GTP transceivers inside the FPGA. We present an overview of our design, focusing on the newly added hardware features
Anticancer activity of cationic porphyrins in melanoma tumour-bearing mice and mechanistic in vitro studies
Background
Porphyrin TMPyP4 (P4) and its C14H28-alkyl derivative (C14) are G-quadruplex binders and singlet oxygen (1O2) generators. In contrast, TMPyP2 (P2) produces 1O2 but it is not a G-quadruplex binder. As their photosensitizing activity is currently undefined, we report in this study their efficacy against a melanoma skin tumour and describe an in vitro mechanistic study which gives insights into their anticancer activity.
Methods
Uptake and antiproliferative activity of photoactivated P2, P4 and C14 have been investigated in murine melanoma B78-H1 cells by FACS, clonogenic and migration assays. Apoptosis was investigated by PARP-1 cleavage and annexin-propidium iodide assays. Biodistribution and in vivo anticancer activity were tested in melanoma tumour-bearing mice. Porphyrin binding and photocleavage of G-rich mRNA regions were investigated by electrophoresis and RT-PCR. Porphyrin effect on ERK pathway was explored by Western blots.
Results
Thanks to its higher lipophylicity C14 was taken up by murine melanoma B78-H1 cells up to 30-fold more efficiently than P4. When photoactivated (7.2 J/cm2) in B78-H1 melanoma cells, P4 and C14, but not control P2, caused a strong inhibition of metabolic activity, clonogenic growth and cell migration. Biodistribution studies on melanoma tumour-bearing mice showed that P4 and C14 localize in the tumour. Upon irradiation (660 nm, 193 J/cm2), P4 and C14 retarded tumour growth and increased the median survival time of the treated mice by ~50% (P <0.01 by ANOVA), whereas porphyrin P2 did not. The light-dependent mechanism mediated by P4 and C14 is likely due to the binding to and photocleavage of G-rich quadruplex-forming sequences within the 5\u2032-untranslated regions of the mitogenic ras genes. This causes a decrease of RAS protein and inhibition of downstream ERK pathway, which stimulates proliferation. Annexin V/propidium iodide and PARP-1 cleavage assays showed that the porphyrins arrested tumour growth by apoptosis and necrosis. C14 also showed an intrinsic light-independent anticancer activity, as recently reported for G4-RNA binders.
Conclusions
Porphyrins P4 and C14 impair the clonogenic growth and migration of B78-H1 melanoma cells and inhibit melanoma tumour growth in vivo. Evidence is provided that C14 acts through light-dependent (mRNA photocleavage) and light-independent (translation inhibition) mechanisms.
Keywords: Melanoma B78-H1 cells; Cationic porphyrins; Biodistribution; C57/BL6 mice; Ras genes; G4-RNA; ERK pathwa
Study of Chinese Insurance Companyâs Risk Estimation Index System
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Ageing test of the ATLAS RPCs at X5-GIF
An ageing test of three ATLAS production RPC stations is in course at X5-GIF,
the CERN irradiation facility. The chamber efficiencies are monitored using
cosmic rays triggered by a scintillator hodoscope. Higher statistics
measurements are made when the X5 muon beam is available. We report here the
measurements of the efficiency versus operating voltage at different source
intensities, up to a maximum counting rate of about 700Hz/cm^2. We describe the
performance of the chambers during the test up to an overall ageing of 4 ATLAS
equivalent years corresponding to an integrated charge of 0.12C/cm^2, including
a safety factor of 5.Comment: 4 pages. Presented at the VII Workshop on Resistive Plate Chambers
and Related Detectors; Clermont-Ferrand October 20th-22nd, 200
System Test of the ATLAS Muon Spectrometer in the H8 Beam at the CERN SPS
An extensive system test of the ATLAS muon spectrometer has been performed in
the H8 beam line at the CERN SPS during the last four years. This spectrometer
will use pressurized Monitored Drift Tube (MDT) chambers and Cathode Strip
Chambers (CSC) for precision tracking, Resistive Plate Chambers (RPCs) for
triggering in the barrel and Thin Gap Chambers (TGCs) for triggering in the
end-cap region. The test set-up emulates one projective tower of the barrel
(six MDT chambers and six RPCs) and one end-cap octant (six MDT chambers, A CSC
and three TGCs). The barrel and end-cap stands have also been equipped with
optical alignment systems, aiming at a relative positioning of the precision
chambers in each tower to 30-40 micrometers. In addition to the performance of
the detectors and the alignment scheme, many other systems aspects of the ATLAS
muon spectrometer have been tested and validated with this setup, such as the
mechanical detector integration and installation, the detector control system,
the data acquisition, high level trigger software and off-line event
reconstruction. Measurements with muon energies ranging from 20 to 300 GeV have
allowed measuring the trigger and tracking performance of this set-up, in a
configuration very similar to the final spectrometer. A special bunched muon
beam with 25 ns bunch spacing, emulating the LHC bunch structure, has been used
to study the timing resolution and bunch identification performance of the
trigger chambers. The ATLAS first-level trigger chain has been operated with
muon trigger signals for the first time
A survey on independence-based Markov networks learning
This work reports the most relevant technical aspects in the problem of
learning the \emph{Markov network structure} from data. Such problem has become
increasingly important in machine learning, and many other application fields
of machine learning. Markov networks, together with Bayesian networks, are
probabilistic graphical models, a widely used formalism for handling
probability distributions in intelligent systems. Learning graphical models
from data have been extensively applied for the case of Bayesian networks, but
for Markov networks learning it is not tractable in practice. However, this
situation is changing with time, given the exponential growth of computers
capacity, the plethora of available digital data, and the researching on new
learning technologies. This work stresses on a technology called
independence-based learning, which allows the learning of the independence
structure of those networks from data in an efficient and sound manner,
whenever the dataset is sufficiently large, and data is a representative
sampling of the target distribution. In the analysis of such technology, this
work surveys the current state-of-the-art algorithms for learning Markov
networks structure, discussing its current limitations, and proposing a series
of open problems where future works may produce some advances in the area in
terms of quality and efficiency. The paper concludes by opening a discussion
about how to develop a general formalism for improving the quality of the
structures learned, when data is scarce.Comment: 35 pages, 1 figur
Single hadron response measurement and calorimeter jet energy scale uncertainty with the ATLAS detector at the LHC
The uncertainty on the calorimeter energy response to jets of particles is
derived for the ATLAS experiment at the Large Hadron Collider (LHC). First, the
calorimeter response to single isolated charged hadrons is measured and
compared to the Monte Carlo simulation using proton-proton collisions at
centre-of-mass energies of sqrt(s) = 900 GeV and 7 TeV collected during 2009
and 2010. Then, using the decay of K_s and Lambda particles, the calorimeter
response to specific types of particles (positively and negatively charged
pions, protons, and anti-protons) is measured and compared to the Monte Carlo
predictions. Finally, the jet energy scale uncertainty is determined by
propagating the response uncertainty for single charged and neutral particles
to jets. The response uncertainty is 2-5% for central isolated hadrons and 1-3%
for the final calorimeter jet energy scale.Comment: 24 pages plus author list (36 pages total), 23 figures, 1 table,
submitted to European Physical Journal
Standalone vertex ďŹnding in the ATLAS muon spectrometer
A dedicated reconstruction algorithm to find decay vertices in the ATLAS muon spectrometer is presented. The algorithm searches the region just upstream of or inside the muon spectrometer volume for multi-particle vertices that originate from the decay of particles with long decay paths. The performance of the algorithm is evaluated using both a sample of simulated Higgs boson events, in which the Higgs boson decays to long-lived neutral particles that in turn decay to bbar b final states, and pp collision data at âs = 7 TeV collected with the ATLAS detector at the LHC during 2011
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